Bio

I have been working in the field of bioinformatics for omics ever since I was finalizing my undergraduate studies. Back then, as a student, I realized that it could be a promising area with no strings attached. The biological data analysis skillset revealed itself as a powerful toolkit to investigate the molecular traits of any living being.

Over the course of years, I successfully applied my expertise to investigate different organisms and biomolecules:

  • I contributed to our current plant genomics and transcriptomics knowledge by generating and integrating transposable element (TEs) and microRNA annotations (PlanTE-MIR DB), and by establishing and characterizing transcriptomes;
  • I had the opportunity to board on partnerships that evaluated the stress response under environmental changes in a model microbe (Caulobacter crescentus) and characterized the molecular traits of a plant pathogen (Xanthomonas citri);
  • I conducted research on an archaeal extremophile—the halophile Halobacterium salinarum was the object of study for my dissertation. Our data integration efforts, combining genomics, transcriptomics, and proteomics, culminated in a systems-level resource for mapping the landscape of post-transcriptional regulation in this organism (Halo Atlas). As an example, and again bringing TEs to the table, we have offered evidence that transposase-encoding transcripts, carried by prokaryotic insertion sequences, are regulated at the post-transcriptional level.

Currently, at the Lieber Institute for Brain Development, I work on deciphering the contribution of the human retroelements to neurodevelopmental disorders.

Education

University of Sao Paulo | Ribeirao Preto, SP, Brazil

Ph.D. in Bioinformatics | 2016 - 2021

State University of Londrina | Londrina, PR, Brazil

M.S. in Genetics and Molecular Biology | 2014 - 2016

State University of Londrina | Londrina, PR, Brazil

B.S. in Biological Sciences | 2009 - 2013

Publications

Please, see my Google Scholar profile for authored and co-authored publications.

Alan Lorenzetti


Bio

I have been working in the field of bioinformatics for omics ever since I was finalizing my undergraduate studies. Back then, as a student, I realized that it could be a promising area with no strings attached. The biological data analysis skillset revealed itself as a powerful toolkit to investigate the molecular traits of any living being.

Over the course of years, I successfully applied my expertise to investigate different organisms and biomolecules:

  • I contributed to our current plant genomics and transcriptomics knowledge by generating and integrating transposable element (TEs) and microRNA annotations (PlanTE-MIR DB), and by establishing and characterizing transcriptomes;
  • I had the opportunity to board on partnerships that evaluated the stress response under environmental changes in a model microbe (Caulobacter crescentus) and characterized the molecular traits of a plant pathogen (Xanthomonas citri);
  • I conducted research on an archaeal extremophile—the halophile Halobacterium salinarum was the object of study for my dissertation. Our data integration efforts, combining genomics, transcriptomics, and proteomics, culminated in a systems-level resource for mapping the landscape of post-transcriptional regulation in this organism (Halo Atlas). As an example, and again bringing TEs to the table, we have offered evidence that transposase-encoding transcripts, carried by prokaryotic insertion sequences, are regulated at the post-transcriptional level.

Currently, at the Lieber Institute for Brain Development, I work on deciphering the contribution of the human retroelements to neurodevelopmental disorders.

Education

University of Sao Paulo | Ribeirao Preto, SP, Brazil

Ph.D. in Bioinformatics | 2016 - 2021

State University of Londrina | Londrina, PR, Brazil

M.S. in Genetics and Molecular Biology | 2014 - 2016

State University of Londrina | Londrina, PR, Brazil

B.S. in Biological Sciences | 2009 - 2013

Publications

Please, see my Google Scholar profile for authored and co-authored publications.